MANIFEST.in
README.md
setup.py
abritamr/AmrSetup.py
abritamr/Collate.py
abritamr/CustomLog.py
abritamr/RunFinder.py
abritamr/Update.py
abritamr/__init__.py
abritamr/abritamr.py
abritamr/species_config.json
abritamr/version.py
abritamr.egg-info/PKG-INFO
abritamr.egg-info/SOURCES.txt
abritamr.egg-info/dependency_links.txt
abritamr.egg-info/entry_points.txt
abritamr.egg-info/not-zip-safe
abritamr.egg-info/requires.txt
abritamr.egg-info/top_level.txt
abritamr/control/GCA_00129350.fa
abritamr/control/GCA_001441225.fa
abritamr/control/GCA_001647755.fa
abritamr/control/GCA_001931555.fa
abritamr/control/contigs.fa
abritamr/db/refgenes_latest.csv
tests/__init__.py
tests/amrfinder.out
tests/batch.txt
tests/batch_fail.txt
tests/contigs.fa
tests/mdu_qc_checked.csv
tests/summary_matches.txt
tests/summary_matches_shig.txt
tests/summary_partials.txt
tests/summary_partials_shig.txt
tests/test_abritamr.py